• Coastal Research Seen Through an Early Career Lens—A Perspective on Barriers to Interdisciplinarity in Norway 

      Deininger, Anne; Martin, Angela Helen; Pardo, Juan; Berg, Paul Ragnar; Bhardwaj, Jyotirmoy; Catarino, Diana; Fernández-Chacón, Albert; Martinez-Swatson, Karen Agatha; Ono, Kotaro; Oomen, Rebekah Alice; Sodeland, Marte; Sørdalen, Tonje Knutsen; Synnes, Ann-Elin; Thorbjørnsen, Susanna Huneide; Thormar, Jonas (Peer reviewed; Journal article, 2021)
    • Consequences of single-locus and tightly linked genomic architectures for evolutionary responses to environmental change 

      Oomen, Rebekah Alice; Kuparinen, Anna; Hutchings, Jeffrey (Peer reviewed; Journal article, 2020)
    • The era of reference genomes in conservation genomics 

      Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica; Godoy, José A.; Höglund, Jacob; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jantina; Waldvogel, Ann-Marie; Zhang, Guojie; Mazzoni, Camila J.; Jarvis, Erich D.; Bálint, Miklós; Čiampor, Fedor; Aghayan, Sargis A.; Alioto, Tyler S.; Almudí, Isabel; Alvarez, Nadir; Alves, Paulo C.; Amorim, Isabel R.; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Berg, Paul Ragnar; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. Filipe; Chueca, Luis J.; Conti, Elena; Cook-Deegan, Robert; Croll, Daniel; Cunha, Mónica V.; Delsuc, Frédéric; Dennis, Alice B.; Dimitrov, Dimitar; Gilbert, Marcus Thomas Pius; Heintzman, Peter D.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Matschiner, Michael (Peer reviewed; Journal article, 2022)
      Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique ...
    • Fine-Scale Population Differences in Atlantic Cod Reproductive Success: A Potential Mechanism for Ecological Speciation in a Marine Fish 

      Roney, Nancy; Oomen, Rebekah Alice; Knutsen, Halvor; Olsen, Esben Moland; Hutchings, Jeffrey (Journal article; Peer reviewed, 2018)
    • FishSizer: Software solution for efficiently measuring larval fish size 

      Rasmussen, Jeppe Have; Moyano, Marta; Fuiman, Lee A.; Oomen, Rebekah Alice (Peer reviewed; Journal article, 2022)
      Length and depth of fish larvae are part of the fundamental measurements in many marine ecology studies involving early fish life history. Until now, obtaining these measurements has required intensive manual labor and the ...
    • FishSizer: Software solution for efficiently measuring larval fish size 

      Rasmussen, Jeppe Have; Moyano, Marta; Fuiman, Lee A.; Oomen, Rebekah Alice (Peer reviewed; Journal article, 2022)
      Length and depth of fish larvae are part of the fundamental measurements in many marine ecology studies involving early fish life history. Until now, obtaining these measurements has required intensive manual labor and the ...
    • Genomic reaction norms inform predictions of plastic and adaptive responses to climate change 

      Oomen, Rebekah Alice; Hutchings, Jeffrey (Peer reviewed; Journal article, 2022)
      Genomic reaction norms represent the range of gene expression phenotypes (usually mRNA transcript levels) expressed by a genotype along an environmental gradient. Reaction norms derived from common-garden experiments are ...
    • Genomic reaction norms inform predictions of plastic and adaptive responses to climate change 

      Oomen, Rebekah Alice; Hutchings, Jeffrey (Peer reviewed; Journal article, 2022)
      Genomic reaction norms represent the range of gene expression phenotypes (usually mRNA transcript levels) expressed by a genotype along an environmental gradient. Reaction norms derived from common-garden experiments are ...
    • How genomics can help biodiversity conservation 

      Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul Ragnar; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D.; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M.; Mazzoni, Camila J.; Höglund, Jacob (Peer reviewed; Journal article, 2023)
      The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main ...
    • How genomics can help biodiversity conservation 

      Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul Ragnar; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D.; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M.; Mazzoni, Camila J.; Höglund, Jacob; Aghayan, Sargis A.; Alioto, Tyler S.; Almudí, Isabel; Alvarez, Nadir; Alves, Paulo C.; do Rosario, Isabel R. Amorim; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. Filipe C.; Chueca, Luis J.; Gilbert, Marcus Thomas Pius; Heintzman, Peter D.; Jakobsen, Kjetill Sigurd; Matschiner, Michael; Zammit, Gabrielle (Peer reviewed; Journal article, 2023)
      The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main ...
    • Opposing Responses to Scarcity Emerge from Functionally Unique Sociality Drivers 

      Kao, Albert B.; Hund, Amanda K.; Santos, Fernando P.; Young, Jean-Gabriel; Bhat, Deepak; Garland, Joshua; Oomen, Rebekah Alice; McCreery, Helen F. (Peer reviewed; Journal article, 2023)
      From biofilms to whale pods, organisms across taxalive in groups, thereby accruing numerous diverse benefits of soci-ality. All social organisms, however, pay the inherent cost of in-creased resource competition. One expects ...
    • Pathways towards a sustainable future envisioned by early-career conservation researchers 

      Raatikainen, Kaisa; Purhonen, Jenna; Pohjanmies, Tähti; Peura, Maiju; Nieminen, Eini; Mustajärvi, Linda; Helle, Ilona; Shennan-Farpon, Yara; Ahti, Pauliina; Basile, Marco; Bernardo, Nicola; Bertram, Michael; Bouarakia, Oussama; Brias-Guinart, Aina; Fijen, Thijs; Froidevaux, Jérémy; Hemmingmoore, Heather; Hocevar, Sara; Kendall, Liam; Lampinen, Jussi; Marjakangas, Emma-Liina; Martin, Jake M; Oomen, Rebekah Alice; Segre, Hila; Sidemo-Holm, William; Silva, André P; Thorbjørnsen, Susanna Huneide; Torrents-Tico, Miquel; Zhang, Di; Ziemacki, Jasmin (Peer reviewed; Journal article, 2021)
      Scientists have warned decision-makers about the severe consequences of the global environmental crisis since the 1970s. Yet ecological degradation continues and little has been done to address climate change. We investigated ...
    • Preprinting is positively associated with early career researcher status in ecology and evolution 

      Wolf, Jesse F.; MacKay, Layla; Haworth, Sarah E.; Cossette, Marie-Laurence; Dedato, Morgan N.; Young, Kiana B.; Elliott, Colin I.; Oomen, Rebekah Alice (Peer reviewed; Journal article, 2021)
    • A roadmap for understanding the evolutionary significance of structural genomic variation 

      Mérot, Claire; Oomen, Rebekah Alice; Tigano, Anna; Wellenreuther, Maren (Peer reviewed; Journal article, 2020)
      Structural genomic variants (SVs) take diverse forms and are ubiquitous drivers of ecological and evolutionary processes. Most studies of SVs focus on the adaptive significance of gene duplications and large inversions. ...
    • The acoustic repertoire of Atlantic cod (Gadus morhua) and the effect of feeding on broadband clicks and their sound characteristics 

      Lie, Annika (Master thesis, 2023)
      Populations of Atlantic cod (Gadus morhua) along the Skagerrak coast remain below viable levels today despite various implemented management strategies aimed at their recovery. Augmented management approaches are needed ...
    • Transcriptomic responses to environmental change in fishes: Insights from RNA sequencing 

      Oomen, Rebekah Alice; Hutchings, Jeffrey (Journal article, 2017)
      The need to better understand how plasticity and evolution affect organismal responses to environmental variability is paramount in the face of global climate change. The potential for using RNA sequencing (RNA-seq) to ...
    • Unlocking the potential of deep learning for marine ecology: overview, applications, and outlook 

      Goodwin, Morten; Halvorsen, Kim Aleksander Tallaksen; Jiao, Lei; Knausgård, Kristian Muri; Martin, Angela Helen; Moyano, Marta; Oomen, Rebekah Alice; Rasmussen, Jeppe Have; Sørdalen, Tonje Knutsen; Thorbjørnsen, Susanna Huneide (Peer reviewed; Journal article, 2022)
      The deep learning (DL) revolution is touching all scientific disciplines and corners of our lives as a means of harnessing the power of big data. Marine ecology is no exception. New methods provide analysis of data from ...
    • Warming Accelerates the Onset of the Molecular Stress Response and Increases Mortality of Larval Atlantic Cod 

      Oomen, Rebekah Alice; Knutsen, Halvor; Olsen, Esben Moland; Jentoft, Sissel; Stenseth, Nils Christian; Hutchings, Jeffrey (Peer reviewed; Journal article, 2022)